HMRC's method
- Start with the total (gross) amount of the subcontractor's invoice.
- Take away the VAT, if the subcontractor is VAT registered.
- Take away what the subcontractor paid for materials, consumable stores, fuel (except for travelling), plant hire, and manufacturing or prefabricating materials.
- Apply the rate to what is left: 20% if registered, 30% if not, 0% with gross payment status.
Sources: gov.uk, making deductions and CIS 340, section 3.